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Title page for ETD etd-05042004-160830


Type of Document Dissertation
Author Gattis, James Lawson
Author's Email Address gattis@sb.fsu.edu
URN etd-05042004-160830
Title The Active Site Cysteine Of Arginine Kinase- Structural And Functional Characterization Of Partially Active Mutants.
Degree Doctor of Philosophy
Department Chemistry and Biochemistry, Department of
Advisory Committee
Advisor Name Title
Michael Blaber Committee Chair
Alan Marshall Committee Member
Michael S. Chapman Committee Member
Timothy Cross Committee Member
W. Ross Ellington Committee Member
Keywords
  • Crystallography
  • Bimolecular Enzyme
  • Mutant Enzyme
  • Arginine Kinase
  • Active Site Cysteine
  • Enzyme Kinetics
Date of Defense 2004-04-04
Availability unrestricted
Abstract
Arginine kinase buffers cellular ATP levels by catalyzing reversible phosphoryl transfer between ATP and arginine. A conserved cysteine has long been thought important in catalysis. Here, cysteine 271 of horseshoe crab arginine kinase has been mutated to serine, alanine, asparagine, or aspartate. Catalytic turnover rates were 0.02-1.0% of wild type, but the activity of uncharged mutations could be partially rescued with chloride. Steady state binding constants were slightly increased, more so for phospho-L-arginine than ADP. Substrate binding synergy observed in many phosphagen kinases was reduced or eliminated in mutant enzymes. The crystallographic structure of the alanine mutant at 2.3Å resolution, determined as a transition state analog complex with arginine, nitrate, and MgADP, was nearly identical to wild-type. Enzyme–substrate interactions are maintained as in wild-type, and substrates remain at least roughly aligned for in-line phosphoryl transfer. Homology models with serine, asparagine, or aspartate replacing the active site cysteine similarly show only minor structural changes. Most striking, however, is the presence in the C271A mutant crystallographic structure of a chloride ion within 3.5Å of the non-reactive Nη substrate nitrogen, approximating the position of the sulfur in the wild-type’s cysteine. Together the results contradict prevailing speculation that the cysteine mediates a substrate-induced conformational change, confirm that it is the thiolate form that is relevant to catalysis, and suggest that one of its roles is to help enhance the catalytic rate through electrostatic stabilization of the transition state.
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